Insertion junction: CLIP2.050727_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050727
Chromosome:plastome
Location:130014
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802318 ChreCp054,2716983,atpF ATP synthase CF0 B subunit; (1 of 1) PTHR34264:SF3 - ATP SYNTHASE SUBUNIT B, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCAGTGGTATGCCACTGCCTCCTTTGATGCCTTCGGCATCCCCTTAC
Internal bar code:CCCGGCTGTCCGTGTTGGTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:223
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:CGTACGTGCGGCAGTTAATT
Suggested primer 2:ACCAATTCCTCACCCTTCGG