Insertion junction: CLIP2.050756_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.050756
Chromosome:chromosome 16
Location:4488163
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g667700 (1 of 3) IPR000104//IPR005069 - Antifreeze protein, type I // Nucleotide-diphospho-sugar transferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAGTCTCTGAAACAAGACCCTTCTGCCACCTGTGTGATCCCGCAGCCGC
Internal bar code:GCACGTAGTTGGCCCTCGCGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:121
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTGTGGCCTTGCAGTCTG
Suggested primer 2:CACAAGGGGGTAAGGAGCTG