Insertion junction: CLIP2.050788_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050788
Chromosome:chromosome 7
Location:4194711
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g342050 NPSN1,VTI3 (1 of 1) K08494 - novel plant SNARE (NSPN); Endosomal Qb-SNARE, Npsn-family (plant/protist-specific) (Qb.III.d) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGTCTCGCTACCCCCATCCGCCGATATCCATACCAGCCCCACCCGCC
Internal bar code:TCAAAGTCGGGTGTACTAAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:249
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TCCATGCAGCAGCTGATGAA
Suggested primer 2:TTGATGGTCTGGTTGAGGGC