Insertion junction: CLIP2.050848_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.050848
Chromosome:chromosome 3
Location:2877804
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g162366 (1 of 2) 1.10.3.3 - L-ascorbate oxidase / Ascorbase 3'UTR_intron
Cre03.g162400 HEATR2B,HTR2B,DNAAF5 (1 of 1) IPR011989//IPR016024//IPR021133 - Armadillo-like helical // Armadillo-type fold // HEAT, type 2; 5-Hydroxytryptamine Receptor 2B intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGGCGTAGGGGGAGTGGAGGATGAAAGATGGCGGTTGCGGAGGATGAGG
Internal bar code:CATCCCTGAGAAGATGACAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:232
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTCAGCCCCACACAAAGT
Suggested primer 2:CGCGCGTGTGTGTGTATATG