Insertion junction: CLIP2.050848_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.050848
Chromosome:chromosome 3
Location:2877809
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g162366 (1 of 2) 1.10.3.3 - L-ascorbate oxidase / Ascorbase 3'UTR_intron
Cre03.g162400 HEATR2B,HTR2B,DNAAF5 (1 of 1) IPR011989//IPR016024//IPR021133 - Armadillo-like helical // Armadillo-type fold // HEAT, type 2; 5-Hydroxytryptamine Receptor 2B intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTAAATAATCACTCCTTGGCATTGGGGATTGGAATGGGGATTGGAATGA
Internal bar code:CATCCCTGAGAAGATGACAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:150
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGCGTGTGTGTGTATATG
Suggested primer 2:TGTTCAGCCCCACACAAAGT