Insertion junction: CLIP2.050859_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.050859
Chromosome:chromosome 16
Location:3897264
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g689100 PUS6 (1 of 2) 5.4.99.23 - 23S rRNA pseudouridine(1911/1915/1917) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTAGGACAGCACAATGGGAAAGGGCTAGGACCTCAACCTGTGTGCGGTG
Internal bar code:GTGGTCCCCCAACCTATGCTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:3051
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:81
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:81

Suggested primers for confirmation by PCR

Suggested primer 1:CGTATAAGGTACCGGCGCTT
Suggested primer 2:CCAATCCCTCCACTGCCAAT