Insertion junction: CLIP2.050881_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.050881
Chromosome:chromosome 2
Location:5939561
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g117900 HEL11,MTR4 DEAD/DEAH box family ATP dependent helicase; (1 of 2) K12598 - ATP-dependent RNA helicase DOB1 (MTR4, SKIV2L2) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTGGGTTAAGGGGTGGTGAGTGGATCGTGAGTGGGTGGATGGGTGCAT
Internal bar code:GGCTGGGTAGGATTTACCGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1130
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:TCGTCATGTCTCATGCTCCG
Suggested primer 2:GTGTGTGTGTGTGTGTGTGG