Insertion junction: CLIP2.050916_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.050916
Chromosome:chromosome 11
Location:2480918
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095111 VSR1 Vacuolar Sorting Receptor; (1 of 1) PTHR22765//PTHR22765:SF56 - RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING // VACUOLAR-SORTING RECEPTOR 5-RELATED 5'UTR
Cre02.g095113 DIV24,TFCE1,TFC-E Tubulin-folding cofactor subunit; (1 of 1) IPR000938//IPR029071 - CAP Gly-rich domain // Ubiquitin-related domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGTAGGAGTGGGAGGGAGGGGGGCCCAGTGTGCGGCAGTGGCTGTCTGG
Internal bar code:GTAATATTTCCTTGTCTAAGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1176
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCATGCATAGCAACACG
Suggested primer 2:CGCTGTTGAGGTCAGAAGGT