Insertion junction: CLIP2.051108_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.051108
Chromosome:chromosome 12
Location:3435185
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497653 SNE13,NED1 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Putative Cinnamoyl-CoA reductase/flavanone 4-reductase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCGTGGCCACTTCCTGGCATCATGCAGGTGTCCATCATCAACCAGATC
Internal bar code:TGTTAAGGTATGTATAATCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1158
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CAAGAAGGGACGGAGGTGAC
Suggested primer 2:CTTGAACCAGCAGCAACCAC