Insertion junction: CLIP2.051177_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.051177
Chromosome:plastome
Location:170290
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802326 psaJ,2716958,ChreCp061 photosystem I subunit IX; (1 of 1) K02697 - photosystem I subunit IX (psaJ) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGTCAGTCATAATTATCAGGTTATCCACAATTTTAATTAAAATGAAA
Internal bar code:GGGGCGTTGGCGGAGGCGTAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:427
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGCAACTTTAGCGGGTGC
Suggested primer 2:TTGCAGCTGTTTTTGACCCC