Insertion junction: CLIP2.051284_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.051284
Chromosome:chromosome 3
Location:3779881
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g169550 AOX2 Alternative oxidase; (1 of 2) PTHR31803:SF3 - ALTERNATIVE OXIDASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTATCCCATTTCCACGGAGCTATCCCGATGCTGGCCTCACGTCTACGCC
Internal bar code:AAATTTTGGTATGGGCTATTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:3121
LEAP-Seq percent confirming:98.0769
LEAP-Seq n confirming:51
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:52

Suggested primers for confirmation by PCR

Suggested primer 1:ATATACGCGCACAGCCTACC
Suggested primer 2:CGCCCTTGTCTAACACGACT