Insertion junction: CLIP2.051462_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.051462
Chromosome:chromosome 17
Location:2561930
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGGCGACGGCGACGTGCCGCACCCCAGCATCGGCGGCGCCCGCCGCAT
Internal bar code:AACAATATAATCGAGATGCAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2379
LEAP-Seq percent confirming:58.0645
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGCTAACATGTTCCTTCG
Suggested primer 2:AGGTGGGCACATGGTAATGG