Insertion junction: CLIP2.051545_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.051545
Chromosome:chromosome 12
Location:4074079
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g516650 STPK6,STK6 Serine/threonine protein kinase; (1 of 1) IPR000719//IPR001245//IPR002290//IPR011009//IPR011050//IPR020635 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Pectin lyase fold/virulence factor // Tyrosine-protein kinase, catalytic domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTCGGGCTGTCGGTGCGCGTGGGCGAGGGCCAGTCTCACCTGTCCAACT
Internal bar code:CGAGAAATTTTGGGTAAGTGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2905
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:TATGGGCACGTGCAAATCCT
Suggested primer 2:GGACTGCGGTTTCTTCCTCA