Insertion junction: CLIP2.051780_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.051780
Chromosome:chromosome 7
Location:4815854
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g346000 (1 of 22) PTHR11017//PTHR11017:SF145 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCTCTAACATATCAAACTCTGTTCGCGTGCGGCTGCTGCAAGCGACC
Internal bar code:GGACTTTCGTGACATACGCAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:536
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GGCATAGTTAAGTCCCCCGG
Suggested primer 2:CGTACCACTTCGGCTTTGGT