Insertion junction: CLIP2.051806_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.051806
Chromosome:chromosome 1
Location:7025218
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800128 (1 of 4) PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC 3'UTR_intron
Cre01.g800129 (1 of 4) PTHR11229//PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3 // 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGGAAGGAGGGGGAGGCGGTAGCAGCAGTGGGACACGGCCGCAGGGGC
Internal bar code:CTTCATGTTAATAACGTCGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:608
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GCCACTACCCCACTTTCCTC
Suggested primer 2:TGAGACAGGTGAGGGAGGAG