Insertion junction: CLIP2.051840_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.051840
Chromosome:chromosome 1
Location:3377921
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021900 PUS11 (1 of 1) PTHR11142:SF10 - TRNA PSEUDOURIDINE SYNTHASE; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCGGGGGGCACAGCAAAACGTGGCGGACGCAGTCCCACGCCGTACGGC
Internal bar code:GCGGAATGTGAGCCCCCGTAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:376
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TAGAGGTGGGGGTCATCAGG
Suggested primer 2:ACCACCTAGCATGTGAGCAC