Insertion junction: CLIP2.051840_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.051840
Chromosome:chromosome 1
Location:3377922
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021900 PUS11 (1 of 1) PTHR11142:SF10 - TRNA PSEUDOURIDINE SYNTHASE; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCCATTGCGCCACCCCTCATCCACCAACACCGCTGTACAAGTTTGCCT
Internal bar code:AATCGTCTATTAGTCAGACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1940
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:ACCACCTAGCATGTGAGCAC
Suggested primer 2:TAGAGGTGGGGGTCATCAGG