Insertion junction: CLIP2.051953_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.051953
Chromosome:plastome
Location:177132
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGTCTTGCTTGCGCTAATCGCAGTATTCCCGATACTTTGTCTGCTTGT
Internal bar code:CTAGCTGGGTGCAGCCGCCGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2216
LEAP-Seq percent confirming:67.8571
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:GCGGTACCACTGCCACTAAA
Suggested primer 2:TTGACCACTAGCACCAGCAG