Insertion junction: CLIP2.052242_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.052242
Chromosome:chromosome 15
Location:1453468
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre15.g641750 (1 of 3) PF05495 - CHY zinc finger (zf-CHY) intron
lncRNA_TCONS_00236644 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCAGGTCGAGCTTCAGGCCCTCAAGGCCACATGGGGCAAGCGGCTGCAT
Internal bar code:TTGCGAGAGTTTAGAGGCAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:527
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCTCACTCTGGTACGGCT
Suggested primer 2:TTCCTCTCGCTGCACTTGAG