Insertion junction: CLIP2.052412_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.052412
Chromosome:chromosome 10
Location:4156323
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g448900 (1 of 80) IPR003882 - Pistil-specific extensin-like protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCGCGTCGTCCGTTTCCCCTTGAAATAGCTACTAGCTGCCATGATACTA
Internal bar code:GGGAAGAGAATTCTTCACGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1627
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:AGTTACCATGCTCACCCTGC
Suggested primer 2:ACATAAGGCGGTGACTGGTG