Insertion junction: CLIP2.052492_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.052492
Chromosome:chromosome 6
Location:663370
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g254100 HRP6,HGRP1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Hydroxyproline-rich glycoprotein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAATGTTTACGGGCATCATTGCGCAACAATGCAGCAGCATGCTGGAGC
Internal bar code:AGCGGTTGCTTGACGGAAATTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1879
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:ACGAGCCAGTGACGTTGAAT
Suggested primer 2:GCTGTTGCGATGTAGGCATG