Insertion junction: CLIP2.052509_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.052509
Chromosome:chromosome 6
Location:2370697
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g268200 TGD1 Lipid transfer machine permease; (1 of 1) PTHR30188//PTHR30188:SF2 - ABC TRANSPORTER PERMEASE PROTEIN-RELATED // PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 1, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTAGGGTTTTAGGCTGATCCCACACCCGCACTTCGGATTTGGCCCTTG
Internal bar code:TTATGCTTGCTACATCGTCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2069
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ACAAGGAGCTTCGTGAGGTG
Suggested primer 2:GCAGCCATGACAATGCGTAG