Insertion junction: CLIP2.052514_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.052514
Chromosome:chromosome 6
Location:3716763
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278158 (1 of 2) IPR001283//IPR003882//IPR014044 - Cysteine-rich secretory protein, allergen V5/Tpx-1-related // Pistil-specific extensin-like protein // CAP domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAATTAAGCGATGCTGCTAGGTGTCAGAGGCAGACAGACAGCGGCCCGAC
Internal bar code:GGGAATTTCATCATGTAATGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:397
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:ATGTTGGTTTCTGCACGCAC
Suggested primer 2:ACGTTGGCAGCAAATTGACC