Insertion junction: CLIP2.052569_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.052569
Chromosome:chromosome 1
Location:3377472
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021900 PUS11 (1 of 1) PTHR11142:SF10 - TRNA PSEUDOURIDINE SYNTHASE; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTTTCGACTAATCCCCCACAACCAGTCATCCCCACACCTACCCATCTAC
Internal bar code:GTGGGGCAGTTTTGAAGAAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2505
LEAP-Seq percent confirming:68.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:ACATCCCCCAGTAGGCTTCT
Suggested primer 2:GAAGAGGTAGACGTAGCGGC