Insertion junction: CLIP2.052647_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.052647
Chromosome:chromosome 17
Location:4339689
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g730300 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGAGCCCCTGGCAGCGGCGGTGGCTGGCGGATCGCTACCTGGGGGCTG
Internal bar code:AGGTTTCTAGGTCTCTCTGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1257
LEAP-Seq percent confirming:40.7407
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTTGATGGGCGTTACCGA
Suggested primer 2:GGTAACACAGCGACCCTCAA