Insertion junction: CLIP2.052681_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.052681
Chromosome:chromosome 10
Location:797536
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g423050 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGCCACGGTCCCTTAGGCGCACCCACAACCACGTAGCTGGCGCCGTTG
Internal bar code:GTGTTTACCCTTTGATGAGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:595
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCAACTCGTCGGTACAGT
Suggested primer 2:CCAAACAGCTTTGTGGACGG