Insertion junction: CLIP2.052747_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.052747
Chromosome:chromosome 8
Location:2547033
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g372900 VFL1 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype; Variable flagella protein 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCTTCAGGCGCTAGCCGTCATCAGCAGGAAACACACCGCTAAGGCCCAT
Internal bar code:CAGATCATGCCGAGACTCTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1386
LEAP-Seq percent confirming:70.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GAACACACATCCCCACTCGT
Suggested primer 2:TCTCTGCGCTGTTTCCTTGT