Insertion junction: CLIP2.052794_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.052794
Chromosome:chromosome 13
Location:2785468
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g801538 (1 of 73) IPR000477//IPR005135 - Reverse transcriptase domain // Endonuclease/exonuclease/phosphatase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGTCCTAACATATCCCGTCGCGCAGCCGCTAGCTCCTCCGTCCACCAG
Internal bar code:ATAGTTTGGTTTGCAAAAGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4167
LEAP-Seq percent confirming:64.3478
LEAP-Seq n confirming:74
LEAP-Seq n nonconfirming:41
LEAP-Seq n unique pos:115

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAAGGCGAGGACGAGATC
Suggested primer 2:GTCCGAAACGTCACCCTTCT