Insertion junction: CLIP2.052893_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.052893
Chromosome:chromosome 12
Location:3027962
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g501752 CDS
lncRNA_TCONS_00075868 CDS
lncRNA_TCONS_00075869 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGAGGGCGGGGTGCGGCCGGTCCTTGTGGGCTATATCAAGCAAGCGATA
Internal bar code:TTGATTTTAATATCGGCCGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:3110
LEAP-Seq percent confirming:82.9787
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:AGCACTAGCCATGCACACAT
Suggested primer 2:TCTTTCAACGGAACCCCTCG