Insertion junction: CLIP2.052907_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.052907
Chromosome:chromosome 3
Location:6849588
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g197550 TMEM48,NDC1 (1 of 1) K14315 - nucleoporin NDC1 (NDC1, TMEM48); Nuclear pore protein NDC1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCACTCTGTTGGGGACTGGTGGTGCCTGCACAAGAACGTGGCACAGAGT
Internal bar code:CAGCTTGGCCTACCAGTTCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4574
LEAP-Seq percent confirming:69.2308
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TTACAACCAGGAACTCCCGC
Suggested primer 2:CGAGCAGCAACACCATCATG