Insertion junction: CLIP2.052961_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.052961
Chromosome:chromosome 10
Location:6169526
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g462500 PUS16 (1 of 1) 5.4.99.42 - tRNA pseudouridine(31) synthase; RNA pseudouridine synthase intron
Cre10.g462550 (1 of 34) IPR001878 - Zinc finger, CCHC-type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTAATGTGCGAAACAGTCTGACTGTCAGCCGCCCCTACTTCCGGCTAG
Internal bar code:GTGTCTGGTGGAGTCACCTGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2862
LEAP-Seq percent confirming:13.6364
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:AGAACTCCTCTGCAATGGCC
Suggested primer 2:TGTACATTTCCGCCCTCACC