Insertion junction: CLIP2.053043_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.053043
Chromosome:chromosome 3
Location:4340648
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00065772

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCCGGATTCGCGAGCTGGCTTCGGACCTGGTTTCGGGGGTGGTTTCGA
Internal bar code:CAAGCACGCGGGTATCCATTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:571
LEAP-Seq percent confirming:17.2414
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CGCCACAGCTCTATCTCCAG
Suggested primer 2:TTCATGGGTGAGGGGAATGC