Insertion junction: CLIP2.053068_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.053068
Chromosome:chromosome 8
Location:2040305
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g368900 TSA2 (1 of 1) PTHR11777//PTHR11777:SF14 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED; Alanyl-tRNA-synthetase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCGACGGTGCGCCCTCCGGGGGGTTACATTCATGACTGGTTAAGCAAGT
Internal bar code:GCCCTATGTGCTGTTAGTGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1610
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:AATGACCTCCTCTCCCCTCC
Suggested primer 2:CTTCCACAACCCCTTCTCCC