Insertion junction: CLIP2.053111_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.053111
Chromosome:chromosome 4
Location:1352096
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g214501 PNP1,PNT2 Chloroplast polyribonucleotide phosphorylase; (1 of 1) 2.7.7.8 - Polyribonucleotide nucleotidyltransferase / Polynucleotide phosphorylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGATGCGGGGCATGCCCCCGCCCCCGCCTGCCCAACTCCTGCTTCCCCT
Internal bar code:TTACATCGCTGTGATTGGTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:155
LEAP-Seq percent confirming:46.1538
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:AATAGAGCGAGGAGGGGGTT
Suggested primer 2:GCGTGCGCGTGTATTTGTAT