Insertion junction: CLIP2.053172_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.053172
Chromosome:chromosome 3
Location:8233807
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g200050 CAL1 (1 of 2) PF13202//PF13833 - EF hand (EF-hand_5) // EF-hand domain pair (EF-hand_8); Calpain family cysteine protease CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAGACGTGGACCAGATGATTAGGTGGGTAAATGCAGGACCATCCTCAC
Internal bar code:GTAGAAGATGTATCTTTCAGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2037
LEAP-Seq percent confirming:50.6024
LEAP-Seq n confirming:42
LEAP-Seq n nonconfirming:41
LEAP-Seq n unique pos:83

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGGGCATGCGTTTGTA
Suggested primer 2:GTGTGACTGTCAACGTGCAC