Insertion junction: CLIP2.053183_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.053183
Chromosome:plastome
Location:185619
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802330 orf2971,ftsH,ChreCp065,2716962 ATP-dependent zinc metalloprotease; (1 of 752) IPR027417 - P-loop containing nucleoside triphosphate hydrolase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATCAAGTCCATCAGTGTTATTTTTTTGTTGTGTTAATCTATACAGATTT
Internal bar code:TAAGTTTTGCAGGGTCACTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:70
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCTGCTGGAATGCCTCTC
Suggested primer 2:TTGGACGTTCCTTACAGGGC