Insertion junction: CLIP2.053316_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.053316
Chromosome:chromosome 9
Location:3462123
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g396065 ALK5 (1 of 9) IPR000719//IPR002290//IPR011009//IPR020635//IPR027916 - Protein kinase domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain // Protein kinase-like domain, Apicomplexa; Aurora-like kinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCCCCACCCACAGGAATCGGTGTCGCCGGACGGTGAAGATGATTGAGG
Internal bar code:ATGAAGGTGCACGTTAAGGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:975
LEAP-Seq percent confirming:68.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:TCTCCCATGAATGCGCAACT
Suggested primer 2:CCAAGTGCTGGTAGGCTTCA