Insertion junction: CLIP2.053418_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.053418
Chromosome:chromosome 10
Location:5818375
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g460350 PGA4 Putative phospholipid/glycerol acyltransferase; (1 of 3) 2.3.1.25 - Plasmalogen synthase 3'UTR_intron
Cre10.g460400 (1 of 1) PF00642//PF04564 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // U-box domain (U-box) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGCTCGGGGTGCGGACAGGGCTGGCCAGCGGACGGACGGTTGGCCAGG
Internal bar code:CACAAGGGACAAGGGTGACATA

Confirmation - LEAP-Seq

LEAP-Seq distance:3066
LEAP-Seq percent confirming:72.7273
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:CGACACTTCGCCCGTGATAG
Suggested primer 2:ATGAAGTCCTCGCCACCTTG