Insertion junction: CLIP2.053431_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.053431
Chromosome:chromosome 10
Location:2375505
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAAAAGGGTCGTATACTCACCCCGTCTTGCATGGACGGCTGACCCCCC
Internal bar code:AGCCGCGGAAGGAACGGAATAC

Confirmation - LEAP-Seq

LEAP-Seq distance:878
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GCTACTGTTGGTGTTGCTGC
Suggested primer 2:AGCAGCAATGTCACCGATGA