Insertion junction: CLIP2.053476_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.053476
Chromosome:chromosome 2
Location:4408444
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g105800 (1 of 2) PTHR24128:SF17 - E3 UBIQUITIN-PROTEIN LIGASE XBAT32 intron
lncRNA_TCONS_00041440 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCAAACCAACTCGCGCAGTCGGACTCGTTGGTCAGTTTGACTACCACCA
Internal bar code:GAGTTAGGTGGCCTCATTGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1372
LEAP-Seq percent confirming:96.875
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:ATTGGCCAAGCACACGAAAC
Suggested primer 2:CCATTGCCTGCGTGTGTATG