Insertion junction: CLIP2.053478_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.053478
Chromosome:chromosome 1
Location:1760681
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g009731 (1 of 781) IPR000104 - Antifreeze protein, type I CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGGGGACGGAGAGCAAAGCGGCGGCTTGGTTGGAGCGGACGGGGATGG
Internal bar code:AAGAGACGCCATGACGGTCGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1470
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:ACATCGGATCGCTAAGCCTG
Suggested primer 2:CAGTACAACCACCACCACCA