Insertion junction: CLIP2.053545_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.053545
Chromosome:plastome
Location:79963
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802297 psbB,2717002,ChreCp032 (1 of 1) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB); photosystem II P680 chlorophyll A apoprotein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAATGAAGCACCTTCAGCTAAACTAGCTTGTACACGTTTTTGAATTTCTT
Internal bar code:GCCGTGTGAGAAAGCTTCTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:133
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGGGCAGGTTCTATGGCT
Suggested primer 2:ACGTCACGGAAGATCGTACG