Insertion junction: CLIP2.053632_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.053632
Chromosome:chromosome 17
Location:3802908
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00162932

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTAGACGACGGGGGTGGAGGCTATGGCGCGCCCCTGCCGGGCCGCCCCG
Internal bar code:GCCTGGGCAGGCCGGGGTCGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:456
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:TGATTCGCCCGGAGTTAGTG
Suggested primer 2:CGGCATGGCTCATTCCATTG