Insertion junction: CLIP2.053635_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.053635
Chromosome:chromosome 13
Location:4570702
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g603400 SRH22 (1 of 1) PTHR10799//PTHR10799:SF695 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // RING-FINGER, DEAD-LIKE HELICASE, PHD AND SNF2 DOMAIN-CONTAINING PROTEIN; SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCGCCCGTTGGCCACCCCGACCCCCTGCCAGCCGTGGCCGCGCCGTGCC
Internal bar code:AGCTGGGTTAAAGGGTACGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:280
LEAP-Seq percent confirming:31.5789
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGACTTCATTGAGCAGGT
Suggested primer 2:CCTGTCTTGTGCTGTTGTGC