Insertion junction: CLIP2.053719_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.053719
Chromosome:chromosome 9
Location:2972755
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393321 CSR12 (1 of 6) 2.8.2.33 - N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase / GalNAc4S-6ST; Carbohydrate sulfotransferase-related 12 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTACCCCACCCCGGCCCCCACCCCCCCGCTGTACCCCTGGACGTCGGCA
Internal bar code:GGGTACATTCAGAATGGGCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:173
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCATAACCACGGCCTCTTGT
Suggested primer 2:CTCCCTTCCCTCCCTCTACC