Insertion junction: CLIP2.053872_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.053872
Chromosome:chromosome 16
Location:5785557
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680200 (1 of 1) PTHR31419//PTHR31419:SF1 - FAMILY NOT NAMED // AUXIN EFFLUX CARRIER FAMILY PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAGGAAAACGCCGTCGAGTATTGAGTGGCCAGGCCAGATTCTGGGGATT
Internal bar code:AGGGCCTGGATACAGTGAGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:615
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGTCTTGTGCGAAGGGAC
Suggested primer 2:TAGCCACATACCGACCTCCA