Insertion junction: CLIP2.053872_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.053872
Chromosome:chromosome 16
Location:5785565
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g680200 (1 of 1) PTHR31419//PTHR31419:SF1 - FAMILY NOT NAMED // AUXIN EFFLUX CARRIER FAMILY PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGCTTCACAGTGAACAGGAACAGCGTCAGCCAGAAGGGTATTGCCACAA
Internal bar code:AGGGCCTGGATACAGTGAGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1932
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:47
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:TAGCCACATACCGACCTCCA
Suggested primer 2:TCTGTCTTGTGCGAAGGGAC