Insertion junction: CLIP2.053924_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.053924
Chromosome:chromosome 12
Location:6020259
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g534550 PHR4 (1 of 1) PTHR11455:SF2 - BLUE-LIGHT PHOTORECEPTOR PHR2; Putative photolyase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTCACCCCCTCCTCTGCGCCCGTGCGCCTGCACGCGACTCTCTCCCTT
Internal bar code:GACGACTCTGTCGCGAATCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2593
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CGTCTGCGGTAACAGGCATA
Suggested primer 2:ACTTCCATCACCTGTGGCTG