Insertion junction: CLIP2.053951_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.053951
Chromosome:chromosome 10
Location:6369357
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g464133 CDS
Cre10.g464200 (1 of 10) IPR000104//IPR001810 - Antifreeze protein, type I // F-box domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGCAGCATCTGTAGCTCCCGCGCCAGCAGCTGTTGGCTTTGTTGTTGAG
Internal bar code:GATTTCGGCCAATAAAATGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1609
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCTAGCCTGCCTTTTGCT
Suggested primer 2:CGATAGCAACGCAGAAGCAC