Insertion junction: CLIP2.054003_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.054003
Chromosome:chromosome 12
Location:3431832
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g497652 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN intron
Cre12.g497653 SNE13,NED1 (1 of 8) PTHR10366//PTHR10366:SF411 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173 PROTEIN; Putative Cinnamoyl-CoA reductase/flavanone 4-reductase 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTCGTATAAGCAGGTGGGCAAAGACGGGCAAAGGCACAATGGCGATGTT
Internal bar code:GGTATGATGTGAGGGCTCAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:148
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCCCCCACAGCAAGAAG
Suggested primer 2:GTGAGGGCCCATGTCATGAA